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S1182_SPI-M-O_Summary_of_modelling_of_easing_roadmap_step_2_restrictions.pdf
S1182_SPI-M-O_Summary_of_modelling_of_easing_roadmap_step_2_restrictions.pdf
1of 23SPI-M-O: Summary of further modelling ofeasing restrictions–Roadmap Step 2Date: 31stMarch 2021Summary1.R in England is estimated to be between 0.8 and 1.0, higher than that estimated before schools reopened (between 0.6 to 0.8). As yet, the full effect of schools has not been fully reflected in these estimates nor has theimpactof easing restrictions from 29thMarch.2.The modelling presented here does not account for waning immunity nor the future emergence of immune-or vaccine-escapevariants.TheB.1.351 strain of SARS-CoV-2 is of particular concern for the UK,given the known reduced protection against mild tomoderate diseasefrom some vaccines. 3.There is considerable uncertainty about the level of control that can be achieved at each step of the Roadmap, and therefore the subsequent trajectory of hospital admissions and deaths. It remains criticalto evaluate the effect of each step before taking the next.4.While more data have accrued on real-world vaccine effectiveness and coverage, modelling results remain highly dependent on assumptions about unknown factorsincluding the rate of transmission at each stepas a result of behaviour changes; the extent to which baseline measures continue to reduce transmission once restrictions are lifted; the impact of seasonal changes in transmission; and future vaccine rollout speed.High vaccine coverage (90% in under 50-year olds) is assumedhere. Uncertainty increases when looking further into the future.5.Any resurgence in hospital admissions and deaths following Step 2 of the Roadmap aloneis highly unlikely to put unsustainable pressure on the NHS. 6.It is highly likely that there will be a further resurgence in hospitalisations and deathsafter the later steps of the Roadmap. The scale, shape, and timing of any resurgence remain highly uncertain;in most scenarios modelled,any peakis smaller than the wave seen in January 2021, however, scenarios with little transmission reduction after Step 4 orwith pessimistic but plausible vaccine efficacy assumptionscan result in resurgences in hospitalisations of asimilar scale to January2021.7.Maintaining baseline measures to reduce transmission once restrictions are lifted is almost certain to save many lives and minimise the threat to hospital capacity.8.Even accounting for some seasonal variation in transmission, thepeak could occur in either summer or late summer/autumn. It is possible that seasonality could delay or flatten the resurgence but is highly unlikely to prevent it altogether.
·assets.publishing.service.gov.uk·
S1182_SPI-M-O_Summary_of_modelling_of_easing_roadmap_step_2_restrictions.pdf
Prof. Christina Pagel auf Twitter: "This shows London is at almost 50% non B117 (ie NOT "Kent") - and potentially this is all B.1.617.2. NW also much higher at 30% and East of England above 20%. Perhaps why PHE highlighted NW as of particular concern. https://t.co/JZeM4HMfGi" / Twitter
Prof. Christina Pagel auf Twitter: "This shows London is at almost 50% non B117 (ie NOT "Kent") - and potentially this is all B.1.617.2. NW also much higher at 30% and East of England above 20%. Perhaps why PHE highlighted NW as of particular concern. https://t.co/JZeM4HMfGi" / Twitter
This shows London is at almost 50% non B117 (ie NOT "Kent") - and potentially this is all B.1.617.2. NW also much higher at 30% and East of England above 20%. Perhaps why PHE highlighted NW as of particular concern. pic.twitter.com/JZeM4HMfGi— Prof. Christina Pagel (@chrischirp) May 7, 2021
·twitter.com·
Prof. Christina Pagel auf Twitter: "This shows London is at almost 50% non B117 (ie NOT "Kent") - and potentially this is all B.1.617.2. NW also much higher at 30% and East of England above 20%. Perhaps why PHE highlighted NW as of particular concern. https://t.co/JZeM4HMfGi" / Twitter
Household Secondary Attack Rate of COVID-19 and Associated Determinants - PubMed
Household Secondary Attack Rate of COVID-19 and Associated Determinants - PubMed
SARS-CoV-2 is more transmissible in households than SARS-CoV and MERS-CoV, and the elderly ≥60 years old are the most vulnerable to household transmission. Case finding and isolation alone may be inadequate to contain the pandemic and need to be used in conjunction with heightened restriction of hum …
·pubmed.ncbi.nlm.nih.gov·
Household Secondary Attack Rate of COVID-19 and Associated Determinants - PubMed
Single-dose administration and the influence of the timing of the booster dose on immunogenicity and efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine: a pooled analysis of four randomised trials - The Lancet
Single-dose administration and the influence of the timing of the booster dose on immunogenicity and efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine: a pooled analysis of four randomised trials - The Lancet
Between April 23 and Dec 6, 2020, 24 422 participants were recruited and vaccinated across the four studies, of whom 17 178 were included in the primary analysis (8597 receiving ChAdOx1 nCoV-19 and 8581 receiving control vaccine). The data cutoff for these analyses was Dec 7, 2020. 332 NAAT-positive infections met the primary endpoint of symptomatic infection more than 14 days after the second dose. Overall vaccine efficacy more than 14 days after the second dose was 66·7% (95% CI 57·4–74·0), with 84 (1·0%) cases in the 8597 participants in the ChAdOx1 nCoV-19 group and 248 (2·9%) in the 8581 participants in the control group. There were no hospital admissions for COVID-19 in the ChAdOx1 nCoV-19 group after the initial 21-day exclusion period, and 15 in the control group. 108 (0·9%) of 12 282 participants in the ChAdOx1 nCoV-19 group and 127 (1·1%) of 11 962 participants in the control group had serious adverse events. There were seven deaths considered unrelated to vaccination (two in the ChAdOx1 nCov-19 group and five in the control group), including one COVID-19-related death in one participant in the control group. Exploratory analyses showed that vaccine efficacy after a single standard dose of vaccine from day 22 to day 90 after vaccination was 76·0% (59·3–85·9). Our modelling analysis indicated that protection did not wane during this initial 3-month period. Similarly, antibody levels were maintained during this period with minimal waning by day 90 (geometric mean ratio [GMR] 0·66 [95% CI 0·59–0·74]). In the participants who received two standard doses, after the second dose, efficacy was higher in those with a longer prime-boost interval (vaccine efficacy 81·3% [95% CI 60·3–91·2] at ≥12 weeks) than in those with a short interval (vaccine efficacy 55·1% [33·0–69·9] at
·thelancet.com·
Single-dose administration and the influence of the timing of the booster dose on immunogenicity and efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine: a pooled analysis of four randomised trials - The Lancet
Global dynamic spatiotemporal pattern of seasonal influenza since 2009 influenza pandemic
Global dynamic spatiotemporal pattern of seasonal influenza since 2009 influenza pandemic
Background Understanding the global spatiotemporal pattern of seasonal influenza is essential for influenza control and prevention. Available data on the updated global spatiotemporal pattern of seasonal influenza are scarce. This study aimed to assess the spatiotemporal pattern of seasonal influenza after the 2009 influenza pandemic. Methods Weekly influenza surveillance data in 86 countries from 2010 to 2017 were obtained from FluNet. First, the proportion of influenza A in total influenza viruses (PA) was calculated. Second, weekly numbers of influenza positive virus (A and B) were divid...
·idpjournal.biomedcentral.com·
Global dynamic spatiotemporal pattern of seasonal influenza since 2009 influenza pandemic
Relative humidity in droplet and airborne transmission of disease
Relative humidity in droplet and airborne transmission of disease
A large number of infectious diseases are transmitted by respiratory droplets. How long these droplets persist in the air, how far they can travel, and how long the pathogens they might carry survive are all decisive factors for the spread of droplet-borne diseases. The subject is extremely multifaceted and its aspects range across different disciplines, yet most of them have only seldom been considered in the physics community. In this review, we discuss the physical principles that govern the fate of respiratory droplets and any viruses trapped inside them, with a focus on the role of rel...
·link.springer.com·
Relative humidity in droplet and airborne transmission of disease
Longitudinal analysis shows durable and broad immune memory after SARS-CoV-2 infection with persisting antibody responses and memory B and T cells | medRxiv
Longitudinal analysis shows durable and broad immune memory after SARS-CoV-2 infection with persisting antibody responses and memory B and T cells | medRxiv
Ending the COVID-19 pandemic will require long-lived immunity to SARS-CoV-2. We evaluated 254 COVID-19 patients longitudinally from early infection and for eight months thereafter and found a predominant broad-based immune memory response. SARS-CoV-2 spike binding and neutralizing antibodies exhibited a bi-phasic decay with an extended half-life of >200 days suggesting the generation of longer-lived plasma cells. In addition, there was a sustained IgG+ memory B cell response, which bodes well for a rapid antibody response upon virus re-exposure. Polyfunctional virus-specific CD4+ and CD8+ T...
·medrxiv.org·
Longitudinal analysis shows durable and broad immune memory after SARS-CoV-2 infection with persisting antibody responses and memory B and T cells | medRxiv
Sterbefallzahlen während der Corona-Pandemie – neue Methoden und aktuelle Ergebnisse - Statistisches Bundesamt
Sterbefallzahlen während der Corona-Pandemie – neue Methoden und aktuelle Ergebnisse - Statistisches Bundesamt
Wie hat sich die Corona-Pandemie auf die Sterbefälle in Deutschland ausgewirkt? Wie ist es gelungen, diese Daten noch schneller zu veröffentlichen? Und wie lässt sich Übersterblichkeit überhaupt berechnen? Darum geht es in unserer neuen Podcast-Folge mit Dr. Felix zur Nieden, Experte für Demografie und Sterbefallzahlen im Statistischen Bundesamt.
·destatis.de·
Sterbefallzahlen während der Corona-Pandemie – neue Methoden und aktuelle Ergebnisse - Statistisches Bundesamt
25_Mar_2021_Short_Paper_Ventilation_Occupancy_Parameters - 2021.04.21.21255898v1.full.pdf
25_Mar_2021_Short_Paper_Ventilation_Occupancy_Parameters - 2021.04.21.21255898v1.full.pdf
Abstract.Some infectious diseases, including COVID-19,can be transmitted via aerosols thatare emitted by an infectious person and inhaled bysusceptible individuals. Although physicaldistancing effectively reduces short-range airbornetransmission, many infections have occurredwhen sharing room air despite maintaining distancing.We propose two simple parameters asindicators of infection risk for this situation. Theycombine the key factors that control airbornedisease transmission indoors: virus-containing aerosolgeneration rate, breathing flow rate,masking and its quality, ventilation and air cleaningrates, number of occupants, and duration ofexposure. COVID-19 outbreaks show a clear trend inrelation to these parameters that isconsistent with an airborne infection model, supportingthe importance of airborne transmissionfor these outbreaks. The observed trends of outbreaksize vs. risk parameters allow us torecommend values of the parameters to minimize COVID-19indoor infection risk. All of thepre-pandemic spaces are in a regime where they arehighly sensitive to mitigation efforts.Measles outbreaks occur at much lower risk parametervalues than COVID-19, whiletuberculosis outbreaks are observed at much higherrisk parameter values. Since both diseasesare accepted as airborne, the fact that COVID-19 isless contagious than measles does not ruleout airborne transmission. It is important that futureoutbreak reports include ventilationinformation, to allow expanding our knowledge of thecircumstances conducive to airbornetransmission of different diseases
·medrxiv.org·
25_Mar_2021_Short_Paper_Ventilation_Occupancy_Parameters - 2021.04.21.21255898v1.full.pdf
6-Month Follow Up of 8679 Hospitalized COVID-19 Patients in Germany: A Nationwide Cohort Study | medRxiv
6-Month Follow Up of 8679 Hospitalized COVID-19 Patients in Germany: A Nationwide Cohort Study | medRxiv
Background Data on long-term outcomes of hospitalized COVID-19 patients are scarce. Objective To provide a detailed account of hospitalized COVID-19 patients until 180 days after their initial hospitalization. Design Nationwide cohort study using claims data from the German Local Health Care Funds, the health insurer of one-third of the German population. Setting Germany. Patients Adult patients hospitalized in Germany between Feb 1 and April 30, 2020 with PCR-confirmed COVID-19 and a related principal diagnosis. Measurements Patient characteristics and ventilation status, in-hospital, 30-,...
·medrxiv.org·
6-Month Follow Up of 8679 Hospitalized COVID-19 Patients in Germany: A Nationwide Cohort Study | medRxiv
Eurosurveillance | Characteristics of SARS-CoV-2 variants of concern B.1.1.7, B.1.351 or P.1: data from seven EU/EEA countries, weeks 38/2020 to 10/2021
Eurosurveillance | Characteristics of SARS-CoV-2 variants of concern B.1.1.7, B.1.351 or P.1: data from seven EU/EEA countries, weeks 38/2020 to 10/2021
We compared 19,207 cases of SARS-CoV-2 variant B.1.1.7/S gene target failure (SGTF), 436 B.1.351 and 352 P.1 to non-variant cases reported by seven European countries. COVID-19 cases with these variants had significantly higher adjusted odds ratios for hospitalisation (B.1.1.7/SGTF: 1.7, 95% confidence interval (CI): 1.0–2.9; B.1.351: 3.6, 95% CI: 2.1–6.2; P.1: 2.6, 95% CI: 1.4–4.8) and B.1.1.7/SGTF and P.1 cases also for intensive care admission (B.1.1.7/SGTF: 2.3, 95% CI: 1.4–3.5; P.1: 2.2, 95% CI: 1.7–2.8).
·eurosurveillance.org·
Eurosurveillance | Characteristics of SARS-CoV-2 variants of concern B.1.1.7, B.1.351 or P.1: data from seven EU/EEA countries, weeks 38/2020 to 10/2021
Possible link between higher transmissibility of B.1.617 and B.1.1.7 variants of SARS-CoV-2 and increased structural stability of its spike protein and hACE2 affinity | bioRxiv
Possible link between higher transmissibility of B.1.617 and B.1.1.7 variants of SARS-CoV-2 and increased structural stability of its spike protein and hACE2 affinity | bioRxiv
The Severe Acute syndrome corona Virus 2 (SARS-CoV-2) outbreak in December 2019 has caused a global pandemic. The rapid mutation rate in the virus has caused alarming situations worldwide and is being attributed to the false negativity in RT-PCR tests, which also might lead to the inefficacy of the available drugs. It has also increased the chances of reinfection and immune escape. We have performed Molecular Dynamic simulations of three different Spike-ACE2 complexes, namely Wildtype (WT), B.1.1.7 variant (N501Y Spike mutant) and B.1.617 variant (L452R, E484Q Spike mutant) and compared the...
·biorxiv.org·
Possible link between higher transmissibility of B.1.617 and B.1.1.7 variants of SARS-CoV-2 and increased structural stability of its spike protein and hACE2 affinity | bioRxiv
Late conditions diagnosed 1–4 months following an initial COVID-19 encounter: a matched cohort study using inpatient and outpatient administrative data — United States, March 1–June 30, 2020 | Clinical Infectious Diseases | Oxford Academic
Late conditions diagnosed 1–4 months following an initial COVID-19 encounter: a matched cohort study using inpatient and outpatient administrative data — United States, March 1–June 30, 2020 | Clinical Infectious Diseases | Oxford Academic
AbstractBackground. Late sequelae of COVID-19 have been reported; however, few studies have investigated the time-course or incidence of late new COVID-19-relat
·academic.oup.com·
Late conditions diagnosed 1–4 months following an initial COVID-19 encounter: a matched cohort study using inpatient and outpatient administrative data — United States, March 1–June 30, 2020 | Clinical Infectious Diseases | Oxford Academic
Robust spike antibody responses and increased reactogenicity in seropositive individuals after a single dose of SARS-CoV-2 mRNA vaccine | medRxiv
Robust spike antibody responses and increased reactogenicity in seropositive individuals after a single dose of SARS-CoV-2 mRNA vaccine | medRxiv
An important question is arising as COVID-19 vaccines are getting rolled out: Should individuals who already had a SARS-CoV-2 infection receive one or two shots of the currently authorized mRNA vaccines. In this short report, we show that the antibody response to the first vaccine dose in individuals with pre-existing immunity is equal to or even exceeds the titers found in naïve individuals after the second dose. We also show that the reactogenicity is significantly higher in individuals who have been infected with SARS-CoV-2 in the past. Changing the policy to give these individuals only ...
·medrxiv.org·
Robust spike antibody responses and increased reactogenicity in seropositive individuals after a single dose of SARS-CoV-2 mRNA vaccine | medRxiv
Less severe course of COVID-19 is associated with elevated levels of antibodies against seasonal human coronaviruses OC43 and HKU1 (HCoV OC43, HCoV HKU1) - International Journal of Infectious Diseases
Less severe course of COVID-19 is associated with elevated levels of antibodies against seasonal human coronaviruses OC43 and HKU1 (HCoV OC43, HCoV HKU1) - International Journal of Infectious Diseases
At present, approximately 10–20% of COVID-19 patients need medical treatment in hospitals, and approximately 5% need long-term treatment in intensive care units (ICU). The majority of COVID-19 patients can be managed in an outpatient setting. Known important risk factors are age, male gender, high body mass index and pre-existing chronic conditions (Jordan et al., 2020). However, young and seemingly healthy individuals are also at risk to die from COVID-19 infections. At present, this heterogeneity of the disease course is not well understood.
·ijidonline.com·
Less severe course of COVID-19 is associated with elevated levels of antibodies against seasonal human coronaviruses OC43 and HKU1 (HCoV OC43, HCoV HKU1) - International Journal of Infectious Diseases
Kaum schwere Verläufe: Kreuzimmunität durch Corona-Vorinfektion - n-tv.de
Kaum schwere Verläufe: Kreuzimmunität durch Corona-Vorinfektion - n-tv.de
Coronaviren sind seit über 50 Jahren bekannt. Sie lösen normalerweise harmlose Erkältungskrankheiten aus. Menschen, die in der Vergangenheit damit infiziert waren, sind zwar nicht vollständig vor Covid-19 geschützt, haben aber bei einer Sars-CoV-2-Infektion dennoch Vorteile.
·n-tv.de·
Kaum schwere Verläufe: Kreuzimmunität durch Corona-Vorinfektion - n-tv.de
Generation of a Sleeping Beauty transposon-based cellular system for rapid and sensitive identification of SARS-CoV-2 host dependency and restriction factors | bioRxiv
Generation of a Sleeping Beauty transposon-based cellular system for rapid and sensitive identification of SARS-CoV-2 host dependency and restriction factors | bioRxiv
The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is the causative agent of the acute respiratory disease COVID-19, which has become a global concern due to its rapid spread. The common methods to monitor and quantitate SARS-CoV-2 infectivity in cell culture are so far time-consuming and labor-intensive. Using the Sleeping Beauty transposase system, we generated a robust and versatile reporter cell system that allows SARS-CoV-2 infection experiments compatible for high-throughput and live cell imaging. The reporter cell is based on lung derived A549 cells, which show a profou...
·biorxiv.org·
Generation of a Sleeping Beauty transposon-based cellular system for rapid and sensitive identification of SARS-CoV-2 host dependency and restriction factors | bioRxiv
Post-acute COVID-19 outcomes in children with mild and asymptomatic disease - The Lancet Child & Adolescent Health
Post-acute COVID-19 outcomes in children with mild and asymptomatic disease - The Lancet Child & Adolescent Health
Data on the clinical outcomes of children with COVID-19 are scarce, particularly in those with asymptomatic and mild disease.1 , 2 Studies involving adults suggest that long-term multisystem sequelae and complications can occur, even with mild COVID-19.3 We aimed to describe medium-term clinical outcomes 3–6 months after diagnosis in children with COVID-19 presenting to a tertiary paediatric hospital. We followed children (aged ≤18 years) at a dedicated COVID-19 follow-up clinic at the Royal Children's Hospital (RCH) in Melbourne, Australia, between March 21, 2020 and March 17, 2021. Children who tested positive for SARS-CoV-2 at the RCH or externally between March 21 and Oct 28, 2020, were referred to this clinic.
·thelancet.com·
Post-acute COVID-19 outcomes in children with mild and asymptomatic disease - The Lancet Child & Adolescent Health