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CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
Systemic analysis of available large-scale biological and biomedical data is critical for developing novel and effective treatment approaches against both complex and infectious diseases. Owing to the fact that different sections of the biomedical data is produced by different organizations/institutions using various types of technologies, the data are scattered across individual computational resources, without any explicit relations/connections to each other, which greatly hinders the comprehensive multi-omics-based analysis of data. We aimed to address this issue by constructing a new bi...
·biorxiv.org·
CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
The Coronavirus Network Explorer: Mining a large-scale knowledge graph for effects of SARS-CoV-2 on host cell function
The Coronavirus Network Explorer: Mining a large-scale knowledge graph for effects of SARS-CoV-2 on host cell function
Building on recent work that identified human host proteins that interact with SARS-CoV-2 viral proteins in the context of an affinity-purification mass spectrometry screen, we use a machine learning-based approach to connect the viral proteins to relevant biological functions and diseases in a large-scale knowledge graph derived from the biomedical literature. Our aim is to explore how SARS-CoV-2 could interfere with various host cell functions, and also to identify additional drug targets amongst the host genes that could potentially be modulated against COVID-19. Results are presented in...
·biorxiv.org·
The Coronavirus Network Explorer: Mining a large-scale knowledge graph for effects of SARS-CoV-2 on host cell function
Fact-Based AI In A Nutshell
Fact-Based AI In A Nutshell
An earlier article, Fact-Based AI — Improving on a Knowledge Graph, I provided a vision for Fact-Based Modelling’s future in AI while…
·towardsdatascience.com·
Fact-Based AI In A Nutshell
"Graph Databases will change your (freakin') life" - Elena Williams (PyConline AU 2020)
"Graph Databases will change your (freakin') life" - Elena Williams (PyConline AU 2020)
Elena Williams https://2020.pycon.org.au/program/A878CA Relational and NoSQL DBs have ruled the roost for a couple of decades now, but in real life there's more to data than just tables or key-pairs. Graph DBMS technology has been coming along for the last decade-or-so and is now quite mature. Everyone wants one, just ask a Fortune 500 company. I mean: why have a table when you can have a knowledge graph? Why not be able to whip up a recommendations engine (or indeed a fraud detector) in a few minutes? Graph databases store data in Graphs -- that is NOT chart-visualisation nor syntax standa...
·youtube.com·
"Graph Databases will change your (freakin') life" - Elena Williams (PyConline AU 2020)
WikiResearch on Twitter
WikiResearch on Twitter
"What if we had no Wikipedia? Domain-independent Term Extraction from a Large News Corpus" identifying “wiki-worthy” terms in a massive news corpus, with minimal dependency on actual Wikipedia entries.(Bilu et al, 2020)https://t.co/wEts0vt9tl pic.twitter.com/7Zv3AnPZXt— WikiResearch (@WikiResearch) September 18, 2020
·twitter.com·
WikiResearch on Twitter
Tireless Readers Those Bots
Tireless Readers Those Bots
AI bots do marvelous things such as facial recognition, document analysis, and creating false videos of world leaders singing pop songs. AI bots, however, are only as smart as they are programmed. …
·arnoldit.com·
Tireless Readers Those Bots
Thomas Kipf on Twitter
Thomas Kipf on Twitter
As requested , here are a few non-exhaustive resources I'd recommend for getting started with Graph Neural Nets (GNNs), depending on what flavour of learning suits you best. Covering blogs, talks, deep-dives, feeds, data, repositories, books and university courses! A thread 👇 pic.twitter.com/el1kb8rS4G— Petar Veličković (@PetarV_93) September 17, 2020
·twitter.com·
Thomas Kipf on Twitter
Transformers are Graph Neural Networks
Transformers are Graph Neural Networks
My engineering friends often ask me: deep learning on graphs sounds great, but are there any real applications? While Graph Neural Networks are used in recommendation systems at Pinterest, Alibaba and Twitter, a more subtle success story is the Transformer architecture, which has taken the NLP world by storm. Through
·thegradient.pub·
Transformers are Graph Neural Networks
A Personalized Entity Repository in the Knowledge Graph
A Personalized Entity Repository in the Knowledge Graph
Google introduces a personalized entity repository, similar to a user-specific knowedge graph to predict actions and suggestions for users of Google.
·searchenginejournal.com·
A Personalized Entity Repository in the Knowledge Graph
Graph Databases for Dummies
Graph Databases for Dummies
Get this introductory book on graph databases to learn the basics of the fastest-growing database technology and get started on your own graph project.
·neo4j.com·
Graph Databases for Dummies
🔮 Offices; algorithms; green stimuli; dodecahedra, precrime & happy kids++ #286
🔮 Offices; algorithms; green stimuli; dodecahedra, precrime & happy kids++ #286
I’m Azeem Azhar. I convene Exponential View to help us understand how our societies and political economy will change under the force of rapidly accelerating technologies. Some of my latest commentary: A short history of knowledge technologies How the roadmap for self-driving cars has led them up a blind alley
·exponentialview.co·
🔮 Offices; algorithms; green stimuli; dodecahedra, precrime & happy kids++ #286
Apple Search is Already Here
Apple Search is Already Here
Apple Search Starts with Siri Search In 2012, I wrote about the Apple Siri Patent application. The patent I wrote about was Intelligent Automated Assistant. In coming out with Siri, an automated assistant, Apple was creating something much more complex than just a search engine. As the patent filing says: Unlike search engines which only […]
·gofishdigital.com·
Apple Search is Already Here
Ellie Young posted on LinkedIn
Ellie Young posted on LinkedIn
Just launched TerminusHub on Hacker News. Would really appreciate upvotes - in the 'Show HN' section. TerminusHub, Revision Control for Structured Data...
·linkedin.com·
Ellie Young posted on LinkedIn
KNowledgeOnWebScale/walder
KNowledgeOnWebScale/walder
Walder offers an easy way to set up a website or Web API on top of decentralized knowledge graphs. - KNowledgeOnWebScale/walder
·github.com·
KNowledgeOnWebScale/walder
Roam Research – A note taking tool for networked thought.
Roam Research – A note taking tool for networked thought.
As easy to use as a word document or bulleted list, and as powerful for finding, collecting, and connecting related ideas as a graph database. Collaborate with others in real time, or store all your data locally.
·roamresearch.com·
Roam Research – A note taking tool for networked thought.
Nine Ways To Use A Knowledge Graph
Nine Ways To Use A Knowledge Graph
All right, I'll admit, this is clickbait. I generally avoid writing "[Fill in Ordinal Number of Bullet Points Here] [Cool|Neat|Amazing|Similar Token] [List of X Thing]" articles, because they usually have no real value to them, but just for once, given the subject matter, I'll succumb to the temptat
·linkedin.com·
Nine Ways To Use A Knowledge Graph