DTW - DYNAMIC TIME WARPING

Mass spectrometry imaging (MSI) is a technique that provides comprehensive molecular information with high spatial resolution from tissue. Today, there is a strong push toward sharing data sets through public repositories in many research fields where MSI is commonly applied; yet, there is no standardized protocol for analyzing these data sets in a reproducible manner. Shifts in the mass-to-charge ratio (m/z) of molecular peaks present a major obstacle that can make it impossible to distinguish one compound from another. Here, we present a label-free m/z alignment approach that is compatible with multiple instrument types and makes no assumptions on the sample’s molecular composition. Our approach, MSIWarp (https://github.com/horvatovichlab/MSIWarp), finds an m/z recalibration function by maximizing a similarity score that considers both the intensity and m/z position of peaks matched between two spectra. MSIWarp requires only centroid spectra to find the recalibration function and is thereby readily applicable to almost any MSI data set. To deal with particularly misaligned or peak-sparse spectra, we provide an option to detect and exclude spurious peak matches with a tailored random sample consensus (RANSAC) procedure. We evaluate our approach with four publicly available data sets from both time-of-flight (TOF) and Orbitrap instruments and demonstrate up to 88% improvement in m/z alignment.

A 9,000 foot gap in the middle of the Morganza to the Gulf storm protection system near Cocodrie should be completed this summer.

This paper presents a WiFi-aided magnetic matching (MM) algorithm for indoor pedestrian navigation with consumer portable devices. This algorithm reduces both the mismatching rate (i.e., the rate of matching to an incorrect point that is more than 20 m away from the true value) and computational load of MM by using WiFi positioning solutions to limit the MM search space. Walking tests with Samsung Galaxy S3 and S4 smartphones in two different indoor environments (i.e., Environment #1 with abundant WiFi APs and significant magnetic features, and Environment #2 with less WiFi and magnetic information) were conducted to evaluate the proposed algorithm. It was found that WiFi fingerprinting accuracy is related to the signal distributions. MM provided results with small fluctuations but had a significant mismatch rate; when aided by WiFi, MM’s robustness was significantly improved. The outcome of this research indicates that WiFi and MM have complementary characteristics as the former is a point-by-point matching approach and the latter is based on profile-matching. Furthermore, performance improvement through integrating WiFi and MM depends on the environment (e.g., the signal distributions of magnetic intensity and WiFi RSS): In Environment #1 tests, WiFi-aided MM and WiFi provided similar results; in Environment #2 tests, the former was approximately 41.6% better. Our results supported that the WiFi-aided MM algorithm provided more reliable solutions than both WiFi and MM in the areas that have poor WiFi signal distribution or indistinctive magnetic-gradient features.

The State of Upper Austria sees artificial intelligence (AI) as one of the most important technology trends of the next decade.

A 9,000 foot gap in the middle of the Morganza to the Gulf storm protection system near Cocodrie should be completed this summer.

Click here to view the latest publication by Department of Computer Science and Engineering at Thapar Institute of Engineering and Technology

This paper presents a WiFi-aided magnetic matching (MM) algorithm for indoor pedestrian navigation with consumer portable devices. This algorithm reduces both the mismatching rate (i.e., the rate of matching to an incorrect point that is more than 20 m away from the true value) and computational load of MM by using WiFi positioning solutions to limit the MM search space. Walking tests with Samsung Galaxy S3 and S4 smartphones in two different indoor environments (i.e., Environment #1 with abundant WiFi APs and significant magnetic features, and Environment #2 with less WiFi and magnetic information) were conducted to evaluate the proposed algorithm. It was found that WiFi fingerprinting accuracy is related to the signal distributions. MM provided results with small fluctuations but had a significant mismatch rate; when aided by WiFi, MM’s robustness was significantly improved. The outcome of this research indicates that WiFi and MM have complementary characteristics as the former is a point-by-point matching approach and the latter is based on profile-matching. Furthermore, performance improvement through integrating WiFi and MM depends on the environment (e.g., the signal distributions of magnetic intensity and WiFi RSS): In Environment #1 tests, WiFi-aided MM and WiFi provided similar results; in Environment #2 tests, the former was approximately 41.6% better. Our results supported that the WiFi-aided MM algorithm provided more reliable solutions than both WiFi and MM in the areas that have poor WiFi signal distribution or indistinctive magnetic-gradient features.

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Surface-based brain imaging analysis offers the advantages of preserving the topology of cortical activation, increasing statistical power of group-level statistics, estimating cortical thickness, and visualizing with ease the pattern of activation across ...

Computed tomographic colonography (CTC) combined with a computer aided detection system has the potential for improving colonic polyp detection and increasing the use of CTC for colon cancer screening. In the clinical use of CTC, a true colonic polyp will be confirmed with high confidence if a radiologist can find it on both the supine and prone scans. To assist radiologists in CTC reading, we propose a new method for matching polyp findings on the supine and prone scans. The method performs a colon registration using four automatically identified anatomical salient points and correlation optimized warping (COW) of colon centerline features. We first exclude false positive detections using prediction information from a support vector machine (SVM) classifier committee to reduce initial false positive pairs. Then each remaining CAD detection is mapped to the other scan using COW technique applied to the distance along the centerline in each colon. In the last step, a new SVM classifier is applied to the candidate pair dataset to find true polyp pairs between supine and prone scans. Experimental results show that our method can improve the sensitivity to 0.87 at 4 false positive pairs per patient compared with 0.72 for a competing method that uses the normalized distance along the colon centerline (p