MethControl

The best signal in the neighborhood is...

SUMA is a program that adds cortical surface based functional imaging analysis to the AFNI suite of programs. It allows viewing 3D cortical surface models, and mapping volumetric data onto them. With SUMA, AFNI can simultaneously and in real-time render Functional Imaging data in 4 modes: Slice, Graph (time series), Volume and Surface with direct links between them.

Demo of how to overlay SPM-produced t-maps onto SUMA surfaces Link to MNI Templates - http://afni.nimh.nih.gov/pub/dist/tgz/suma_MNI_N27.tgz Link to related blog post - http://andysbrainblog.blogspot.com/2012/09/mapping-results-onto-suma-part-2.html Link to website - http://mypage.iu.edu/~ajahn/

Surface-based brain imaging analysis offers the advantages of preserving the topology of cortical activation, increasing statistical power of group-level statistics, estimating cortical thickness, and visualizing with ease the pattern of activation across ...

Hypersensitivity drug reactions (HDRs) encompass a wide spectrum of unpredictable clinical entities. They represent an important health problem, affecting people of all ages, and lead to a large strain on the public health system. Here, we summarize experiments that use high‐throughput genomics technologies to investigate HDRs. We also introduce the field of systems biology as a relatively recent discipline concerned with the integration and analysis of high‐throughput data sets such as DNA microarrays and next‐generation sequencing data. We describe previous studies that have applied systems biology techniques to related fields such as allergy and asthma. Finally, we present a number of potential applications of systems biology to the study of HDRs, in order to make the reader aware of the types of analyses that can be performed and the insights that can be gained through their application.

The application of automated correlation optimized warping (ACOW) to the correction of retention...

This survey provides an overview of higher-order tensor decompositions, their applications, and available software. A tensor is a multidimensional or N-way array. Decompositions of higher-order ten...

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Cluster Computing - Genome comparison poses important computational challenges, especially in CPU-time, memory allocation and I/O operations. Although there already exist parallel approaches of...

A two-dimensional (2-D) correlation optimized warping (COW) algorithm has been developed to align 2-D gas chromatography coupled with time-of-flight mass spectrometry (GC x GC/TOF-MS) data. By partitioning raw chromatographic profiles and warping the grid points simultaneously along the first and se …

The last two decades have seen tremendous progress in the application of two-dimensional correlation spectroscopy (2D-COS) as a versatile analysis method for da...

We present a two-level parallel strategy focused in the enhancement of GECKO software for multiple and pairwise genome comparisons. GECKO was developed to break the computational barriers on search...